-
## Short description of the problem
When we annotate a contigs database with `anvi-run-cazymes`, most of the resulting hits in the gene functions table have `-` for an accession value:
It is…
-
Hi all,
I am analyzing the data from the table that dbCAN gives me and I find that there are entries in which the repeated substrate appears, for example, some appear as a substrate "chitin" and o…
-
Hello,
I installed saccharis_2 on an HPC cluster using conda.
The version I am running is 2.0.0.dev22.
I am trying to test saccharis using the following command:
```
saccharis \
--family GH…
-
I found an issue with the EC numbers on the protein pages and I have some suggestions for changes to how the EC numbers are displayed on the front end that we could discuss during the general meeting:…
-
In the `bin` directory of commit 16765fd there are files with the same names, but numeric suffixes. For example:
* automation_split_CAZy_families.py
* automation_split_CAZy_families_1.py
* back_t…
-
From tony:
Now that db-xrefs.yaml/json is in production, there is a small issue
that I think needs to be taken care of, concerning the use of
BET:0000000 as an entity_type.
BET:0000000 is used as th…
-
Dear all,
run_dbcan version:
Based on commit https://github.com/linnabrown/run_dbcan/commit/f3dd111a9eaf552cdca14f4c8db06baabaa1f2f8, we cloned the repo and built the Docker image from https://git…
-
Hi @wegnerce ,
Im currently working on metatranscriptome of plant samples as well and i've been referring to this amazing work for as a guidance for my bioinformatic analysis. Im very new to all bi…
-
Hi,
I have already finished the annotation step and get the annotations.tsv file, now I am doing the distill. step. Here is my command line "DRAM-v.py distill -i annotations.tsv -o distilled2". H…
-
Dear Developers,
I am trying to do CAZymes analysis using my mRNA reads. I downloaded a copy of the database (CAZyDB.08062022.fa), indexed it to Diamond format, and then performed a diamond blast. …