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hi, this is a great paper and awesome CellTypist models, thanks for this!
I'm seeking for metadata that actually describes the Seurat objects you provide with the supplementary - in all the objects…
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Hi authors,
Compliments for the great tool!
Reading the paper in which you present MD-ALL I focused on the deconvolution of bulk RNAseq data using CIBERSORTx and a custom single cell reference.
I u…
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There are many types of fenestrated endothelial cell, but we only have a couple of classes under this term ('fenestrated cell' ; CL_0000666 )
Some examples + papers to curate:
https://www.perplex…
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Is there any way to enable showing cell types instead of/or in conjunction with their names?
example:
![image](https://github.com/msinger/dmg_cpu_b_map/assets/5828819/eb7cc311-b34e-4003-aad4-326…
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Hi Martin,
Thanks for the great work!
I finished the analysis and I am kinda stuck with interpreting the results.
I have 0 significant individual cells (0 out of 252452 cells) but significant ce…
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Hi, thanks for an exemplary data availability!
I would like to use your dataset for an analysis, and have found the molecule coordinates allright, but I was wondering where I can find the cell type…
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Hi Fabio,
I try to query the API with cell types that contain an underscore (_), and it returns a 400 error.
`
> let api = require('@fabilab/atlasapprox')
> let params = {organism:"a_thaliana",…
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Hi authors,
I am wondering what metric could be used to compare the same peak-to-gene linkage across different cell types? According to the tutorial, "the Shapley values converted to z-score are an…
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Jorstad, Nikolas L., Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza R. Barkan, Kyle J. Travaglini, Darren Bertagnolli, et al. 2023. “Transcriptomic Cytoarchitecture Reveals Principles of Human…
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Hi,
I am going through your vignette.
I have error after I type command: pbmc_B = pbmc[,pbmc$cell.type.coarse %in% 'B']
Error:
Error in h(simpleError(msg, call)) :
error in evaluati…