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Hi,
I am interested in the application of BABEL to multimodal RNA / protein data. You mention you have a proof of concept for this. Would you please be able to point me to the relevant file, and gi…
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Your work is very useful to single-cell multiomics anlaysis. I have tried your model to run in Google colab L4 GPU with the example BMNC CITE-seq dataset. I have completely run the model for 3 times …
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hi all, trying to run citeseq count using 10x data but got this error following my command:
CITE-seq-Count -R1 R1_001.fastq.gz -R2 R2_001.fastq.gz -t tag_list_GEM1.csv -cbf 1 -cbl 16 -umif 17 -umil …
ibseq updated
6 months ago
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Add here important/cautious notes:
- Use an Antibody name different to the gene name. `merge_mtx` and `besca` will not raise error/warning but, when reading the matrix with citeseq=true, it will ma…
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Hi, I have a question, is it possible to run CiteSeq data with STAR solo?
Thanks for helping
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**User story**
As lab users we would like to be able to make a submission from a Stock Plate for the 10x - CITEseq and Emseq pipelines so that we no longer need to do a fake cherrypick to reduce workl…
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Hello,
I was working on the stereo-citeSeq data, and I am using "stereoPipeline_pt_v7.1. The pipeline worked well and generated the report. However, I have a question about the multiomics analysis …
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Hi,
Thanks for developing this great tool. I just have 2 questions regarding CITE-seq-Count.
Question1:
So, I have a multimodal scRNAseq dataset in which both CITEseq and Hashtag antibodies wer…
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Hi , I'm following the tuto and got error
```julia
counts = load_counts(sample_paths; sample_names=["P1","P2"])
┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn o…
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Hello,
I'm getting the following error during UMI correction, when running CITE-seq-Count 1.4.5, Python 3.8.
```
Correcting umis
Traceback (most recent call last):
File "/data/home/hmy961/c…