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There is a significant difference in depth between the two samples in this interval, why is it the simila…
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--Hi,
2 questions:
is CONICS able to detect CNV in germlines single cells ?
and is there a way to compute mosaicism rate ?
thank you --
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Hello, I try to perform CNV detection with infercnvpy with rapids_singlecell integrated 1 M cells.
It still work slow.
Any suggestion to speed up the process of CNV detection?
Could rapids_singlec…
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Hi, kai,
I'm a little confused here, if I have pedigrees and signal intensity files for each sample to test for CNV, and the individual's parents don't have signal intensity files, does that mean I…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hi,
Thanks to the authors for developing this method!
I was looking for a method for further confirmation of CNV genotypes. I'm using samplot for visual confirmation, which is very helpful for rare…
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I have installed finn-examples on Pynq-Z2 (version 2.7), but I cannot run the notebook 3_binarycop_mask_detection.ipynb
The error is:
`Exception: Bitfile for model = bincop-cnv target platform = P…
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We need to determine whether PennCNV is appropriate and effective for analyzing data generated from low-resolution arrays (such as array-CGH with an overall median probe genomi spacing of 40-60 kb).
…
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Hello,
I used SVMU for SV detection based on mummer result and found that in the sv.prefix.txt file, the length of CNV in both reference and query genomes were the same like below:
REF_CHROM R…
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I am calling CNVs in tumour ONT long-reads and want to try using spectre
I assume it is preferred to input SNPs from a matched tumour sample rather than germline SNPs? Or would germline SNPs be mor…