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Hello,
I am attempting to run TEtrimmer on the test files and received the following error:
```
RepeatClassifier failed for rnd_1_family_587 with error code 2
b'Something went wrong with the T…
SamCT updated
2 weeks ago
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We're having a trouble with the bash script to for generating consensus sequences. It runs without errors, and generates a file for each locus, but each of those files is blank.
Does anyone hav…
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Following up on https://github.com/ordinals/ord/issues/2574.
## Objective
The primary objective is to create a robust mechanism for ensuring data integrity and consistency across ordinal indexer…
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* C-Man consensus sequence (WxxW)
* O-glc
* O-fuc
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Hi Yan,
I use abPOA to generate a consensus from four sequences. Here is the distribtuion of n_seq / n_cov in each base in the consensus sequence. My question is, is there a way to remove low cover…
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Dear developers:
openDBA has many applications, which are very interesting. Nanopore provides a kmer model for generating standard nanopore signals. By providing a sequence based on this kmer model, …
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Dear Wayne,
Every now and then I'm looking for freely available molecular biology software, e.g. to give it to our beginner students or use it by myself.
For my own little problems I'm actually u…
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Hello,
I would like to ask if the consensus sequences of delly's output are human or just unknown insertion sequences (maybe virus or bacteria ones).
Thank you.
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Implement the `HeaviestBundle` algorithm described in Lee _et al._ (2003) to generate consensus sequences for a POA graph.
Can also be used to obtain RNA isoforms.
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I'm interested in developing consensus COI reference sequences for major groups in BOLD:
[BOLD](https://www.boldsystems.org/index.php/TaxBrowser_Home)
I'm guessing I can parse the database infor…