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We're having a trouble with the bash script to for generating consensus sequences. It runs without errors, and generates a file for each locus, but each of those files is blank.
Does anyone hav…
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Hello,
I am attempting to run TEtrimmer on the test files and received the following error:
```
RepeatClassifier failed for rnd_1_family_587 with error code 2
b'Something went wrong with the T…
SamCT updated
2 weeks ago
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Hello,
I would like to ask if the consensus sequences of delly's output are human or just unknown insertion sequences (maybe virus or bacteria ones).
Thank you.
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I'm interested in developing consensus COI reference sequences for major groups in BOLD:
[BOLD](https://www.boldsystems.org/index.php/TaxBrowser_Home)
I'm guessing I can parse the database infor…
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`samtools ampliconstats` verifies if the PCR products aligned to the reference originate in the primer regions. I want to get a list of readnames which failed this QC check. The list of those passing …
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**Describe the issue**
I am running RepeatModeler v.2.0.5 and saw a warning sign like the following:
```
RepeatModeler Round # 1
Searching for Repeats
-- Sampling from the database...
Gath…
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Hi,
In both single-cell and bulk RNA sequencing, we use UMIs (Unique Molecular Identifiers). Two reads with the same UMI correspond to the same cDNA molecule. It would be great if we could feed inf…
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**Current Behavior**
There appears to be missing lineages from the https://github.com/corneliusroemer/pango-sequences/blob/main/data/pango-consensus-sequences_genome-nuc.fasta.zst file that are pre…
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Hi Yan,
I use abPOA to generate a consensus from four sequences. Here is the distribtuion of n_seq / n_cov in each base in the consensus sequence. My question is, is there a way to remove low cover…
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Hello,
I am writing to you because I am having trouble understanding the output of my results. I have performed a RNA sequencing with RNA004 and I want to know which sites are m6A. When I get the t…