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Hallo again,
This something new:
```bash
DNA-mapping -i /mnt/Z/Shared\ folder/Shared\ data/DNA/NGS_AP06_apouikli_A006200409/ -o /mnt/Z/Shared\ folder/Shared\ data/DNA/NGS_AP06_apouikli_A006200409/b…
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Hello,
`rtracklayer` has been great for importing various supplementary files from GEO. However, I've run into the following error when trying to import certain bigWig files.
A couple of notes…
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bamtobed and peak calling on bed files
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this is
this is the error code when reaching the multifastq, this is the same pipeline as #1021
I removed some entries to make it readable.
take note the version of my snakePipes
```bash
$snak…
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Building DAG of jobs...
Error: : syntax error in line 2 near 'Spikein'
Traceback (most recent call last):
File "/package/mamba/envs/snakePipes-2.7.2/bin/ChIP-seq", line 193, in
main()
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Hi all,
How am I setting specific commands for the cut and Run in the ChIP-seq pipeline? the cut and tag is specific for the tn5 transposase that adjusts the fragments for +5/-7 (if I recall correctl…
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Dear all,
I try DNA mapping with my commands:
DNA-mapping -i /home/leif/gamma_atac_experiment/raw_data -o /home/leif/gamma_atac_experiment/mapped_data -v --reads 'R1' 'R2' -j 12 --local --DAG --fa…
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I installed latest snakePipes version 2.5.1 on MacOS 11.4 and tried to run the samples provided by the team. I got next error message:
/Users/work/miniconda3/envs/snakePipes/bin/DNA-mapping -i /Vol…