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- [ ] - Create training materials on DGE principles and best practices.
- [ ] - Schedule and conduct DGE training sessions and workshops for contributors, volunteers, and partners.
- [ ] - Develop a…
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Hello,
When I attempt to run differential expression I receive an error related to the DGE table column names. I am working with a Seurat object saved as an .rds file (Seurat version 4.3.0). I am abl…
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### Ask away!
This is my first time running this workflow and my DGE analysis tsv files (for example results_dge.tsv) aren't incorporating the gene names in the gene_name column. Instead, the files d…
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Hello, I hope you can guide me. Download Fastqs from SRA (SRR9843421), it is sequence data from Microwell-seq.
Use
then I used the Drop-seq protocol you posted. The DGE matrix with the following co…
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Someone reported anonymously:
### Website URL
https://www.dge.de
### What browser are u using?
Firefox 120
### Version
1.1.1
### Notes
Cookiewarnung poppt auf
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When performing DGE based on a simple numeric threshold, it is possible to encounter a feature with NA values. In this situation, results may differ if the cells with NA values are included in the dif…
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Hi!
I'm getting a crash when running emptyDropsCellRanger.
The call:
```
DropletUtils::emptyDropsCellRanger(dge)
```
Where dge is a matrix of cells by genes. I'll note this data set is comp…
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Hi,
I am having a hard time preparing my Seurat object for input to SimiC's pipeline. Is there any code you can share about how you created the .pickle file for the DGE matrix that has cell barcode…
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### Description of feature
Hi, thanks for your efforts for developing this wonderful framework! I was wondering if there could be an implementaion of Seurat FindConservedMarkers function, which can p…
SNOL2 updated
1 month ago
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- [ ] dgees
- [ ] dgeesx
- [x] dgeev
- [ ] dgeevx
- [ ] dgges
- [ ] dgges3
- [ ] dggesx
- [x] dggev
- [ ] dggev3
- [ ] dggevx