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There are two zobas with the same name Māʾkal – LOC4396Maekal and LOC4444Makal – and nothing to set them apart. I wonder if they may be doublets
@DenisNosnitsin1970 @CarstenHoffmannMarburg @eu-geni…
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Hi,
I've loved using souporcell for my single nucleus RNAseq analysis. Thanks to Haynes and the team for making such a good program.
On one dataset, though, I saw a result in R* seurat analysis…
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Hi,
I am trying to use doubletFinder package on my scRNAseq data that was obtained after super loading i.e. assumed higher % of doublets. In the package description and real data example the "% doubl…
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Hello! Thank you for creating this great tool. I have gotten CellBender to run successfully on my data. Now, I'm wondering what your recommended pipeline would look like for integrating the outputs wi…
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### Description of feature
SOLO has already been implemented. The following have been implemented in YASCP and could easily be adopted:
```[tasklist]
### Tasks
- [ ] https://github.com/nf-core/s…
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We need to think about how to fit doublets or to say explicitly that we don't. (e.g., OVI 1032/1038 or CIV 1548/1551 -- cases where the wavelengths of the lines are close [and may be blended, like CIV…
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https://kb.10xgenomics.com/hc/en-us/articles/360005165411-Are-there-methods-for-identifying-multiplets-
https://github.com/AllonKleinLab/scrublet
https://bioconductor.org/packages/release/workfl…
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Hi everyone,
I've used Demuxlet since its first release now and I always got constant overestimation of doublets across multiple independent experiments.
Demuxlet predicted doublets percentage with…
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Now that JSON is used with configuration, we can easily define user-specified custom doublet series for use in analysis mode