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Hi,
I'm trying to run one of the notebooks, but for all the import statements are wrong.
Now, that I was able to fix. I also had to install the elpigraph package from https://github.com/Albluca/ElP…
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Hi,
While using python implementation of elpigraph leveraging n_cores>1,the computeprincipalgraph calculation struck at **Node 43** .Below attached the code output for reference.
Computing EPG wit…
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The following code which was functional in year 2021, does not work now:
url="https://raw.githubusercontent.com/j-bac/elpigraph-python/master/data/tree_data.csv"
df=pd.read_csv(url)
data = df.to_…
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Hi @LouisFaure
I am interested in using scFates to identify the tree of cell populations - but I am concerned about the complexity of the data. How complex can the tree be?
For example, imagine a…
vitkl updated
6 months ago
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I am running the basic codes for Elastic principal graph construction as showed in: https://rdrr.io/github/Albluca/ElPiGraph.R/f/guides/trim.Rmd
TreeEPG sessionInfo()
R version 4.1.2 (2021-11-01)…
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I am submitting this job on our cluster using slurm with:
```
models ->
Execution halted
```
```
$ singularity --version
singularity version 3.3.0-1.el7
```
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Hi,
I'm using a loom file saving from a seurat object. My adata is like:
AnnData object with n_obs × n_vars = 56109 × 22965
obs: 'ClusterID', 'ClusterName', 'DF_classification', 'RNA_snn_res_…
XYZuo updated
2 years ago
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Hello,
I'm having trouble upgrading the version of STREAM. While before I had no errors, now none of my scripts work.
I work with conda environments and here is the version of the main packages:
…
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您好,
我可以使用中文请教吗,英文我怕标书不清,谢谢了。
我想请教一下,我使用下面这个函数进行绘制backbone,得到的backbone图形不是曲线,而是一个点,是为什么?
![image](https://github.com/aristoteleo/spateo-release/assets/148845569/5022fb6a-0b68-458a-94c4-c660a254faad)…
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I think the different version of networkx and elpigraph causes this problem. scFates 1.0.2 requires elpigraph-python==0.2.7, but elpigraph-python==0.2.7 uses 'to_scipy_sparse_matrix' of networkx packa…