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Hello Xiaofei,
Thank you for developing the Haphic software.
I am currently working on the assembly of a complex polyploid genome and I am trying to scaffold the “p_utg” sequences obtained from …
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## **Is your feature request related to a problem? Please describe.**
I'll start by stating that I'd be happy to make a walkthrough for this use case if I can get it to work, as I think it could be b…
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Hi
Thanks a lot for this awesome tool!
I am trying to phase an allopentaploid genome which we expect to have 4 subgenomes. Although the clustering works very well, I having trouble to adjust the s…
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Hi
I am running ipyrad v0.9.95 , with 180 pared end GBS with samples, denovo. In step 3 after join unmerged pairs the next, clustering and mapping, is still at 0%, after 19 hours. I am using 50 cor…
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Hi Dr.Camargo:
I find this nice project when I read your IMG/VR v4 manuscripts published on Nucleic Acids Research. I have some doubts about this and hope you can help me about them.
1.I tried this…
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In recent runs against the latest NCBI dataset of Listeria, we've observed large discrepancies between RabbitTClust and NCBI clustering results. Here're a few examples.
1. When distance threshold < …
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Hello group!
I met a problem when I run
```
rsem-generate-ngvector ${REF} ${ROAD}/genome/wheat_ref
rsem-for-ebseq-calculate-clustering-info 25 /storage/yifang/20190405_RNAseq/data/rsem/genome/w…
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The reason why I'm asking is because VirFinder, geNomad, VirSorter(2), etc. operate on individual contigs then those results are usually fed into CheckV to determine how complete/contaminated the viru…
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**Describe the issue**
Trying to run the LTR Pipeline alone to add to some libraries and then re-mask some genomes. So far, this is only happening with one genome. I use the -LTRStruc flag for Repe…
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cc @bluegenes
working version here, https://hackmd.io/-sFCAl_3T1qSqH_GvV_pvw - add stuff there, or add thoughts in comments below, but please do not edit this header except to update it with the c…