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Hi!
Thanks so much for developing tools like inStrain and dRep, they're very user-friendly. I have some questions regarding building the representative (rep) database. Initially, I used de novo ass…
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I believe the read depth chart is currently calculating the average coverage over the entire genome. This will yield a very small Y axis, so even if you zoom into an area where you know there's covera…
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@kubu4 can you ask Macrogen for the cost is per sample for WGBS data for the Pacific sleeper shark, target coverage of 20x for a large genome (could be as large as 12Gb). This could theoretically be …
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Currently, the coverage and alignment data are associated with the "Alignment profile" artifact, which contains a "none.biom" table. The features of the "none.biom" table are lineage strings, but the …
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Hi,
I'm using this command to generate metagenomes from a set of genome fasta files:
iss generate --draft (list of *.fna files) --output --model nextseq --coverage uniform -p 128 -n 50M
Alt…
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I and @valerianilucrezia were discussing with @caravagn about what would be useful for the `simulate_seq` function to return.
As today, it returns only the sequencing results, but we feel like it w…
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Hello,
Just trying to figure out how I could use omixer to detect the presence of GBMs in a particular species. If I was just looking to produce the coverage file could I load a table with the KOs pr…
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The genome size of the species I'm assembling is 2.6Gb, and the ONT data comes from dorado sup v5.0.0 (R10).
When I used 167GB data (>Q7, >10Kb) with "Nanopore-UL-May2022.conf", I got an assembly o…
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This is a request to update the "genome coverage" [[OBI:0001939](http://purl.obolibrary.org/obo/OBI_0001939)]
**New parent term:** sequence data [[OBI:0000973](http://purl.obolibrary.org/obo/OBI_00…
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Hi,
I was wondering if decoil currently supports the t2t reference genome?
I used decoil on the same sample with the grch38 and then the t2t reference genome. The grch38 reference gave the expe…