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Hi,
With gatk 4.6.0 and Funcotator data sources v1.8, and output in VCF format, I'm seeing some annotations with strange character combinations inside of them:
"_%7C_"
"_%20_"
For example for on…
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### Description of the bug
Singularity container retrieval failed when trying to download the nf-core/sarek pipeline. While making image from oci registry I got an error fetching image to cache and f…
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## Background
* Wikipadia article [about ASN.1](https://en.wikipedia.org/wiki/ASN.1)
* ISO Standard [ISO/IEC 8824-1:2021](ISO/IEC 8824-1:2021), including the [RSS](https://www.iso.org/contents/dat…
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I would like to trigger a brainstorming around the question which other databases could be
useful to be included in biomartr. I would be grateful to receive input from different life science communit…
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add this to the ctat genome lib builder for FI for quick retrieval instead of building on the fly
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Hi. I run the downloadRefSeq.pl command -- `downloadRefSeq.pl --seqencesOutDirectory data/metamaps-db/refseq --taxonomyOutDirectory data/metamaps-db/taxonomy`, and after about two days of churning dat…
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I will update some of the performance test on variants storage and retrieval here. I wrote a script to record time, memory and disk usage of variantTools import and association steps. Please check bel…
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This thread to serve as a request for a presentation at the next Data Stewards / DCPPC call on Alliance for Genome Resources (AGR) Supplement Aims. Specific Aim 3: "Develop the AGR Disease Navigator t…
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Just throwing ideas out here, but I wanted to at least write them down and maybe other people would have useful comments.
Now that we're putting increasingly large numbers of genomes in Apollo, data …
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Hi, I am getting this error when trying to run homopolish:
[hi.silva@login2 genome_polishing_13]$ homopolish polish -a out_medaka_TAQ13_genome_polished.fasta -s bacteria.msh -m R9.4.pkl -o homopoli…