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Try running with 1 hr time steps & gillespie's algorithm
m6thu updated
5 years ago
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Hi,
I get different results when running the example from the README with differing number of steps (and a fixed seed).
```python
import rebop
from matplotlib.cm import viridis as cmap
sir …
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kaizu updated
4 years ago
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Hi all,
I was just wondering if there were any plans to implement SSAs for dealing with stiff systems, like implicit tau-leaping [1, 2] or the slow-scale SSA [3]? I saw that @ChrisRackauckas mentio…
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Might be useful to have an issue to add useful papers as we come across them.
The Wolf Am Nat one looks pretty useful.
Might also be some useful stuff in this meta-analysis: http://beheco.oxford…
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```
from roadrunner import RoadRunner
sbml_file = "AModel.sbml"
r = RoadRunner(sbml_file)
integrators = ('cvode', 'gillespie', 'rk4', 'rk45', 'euler')
data = {}
for integrator in integrators…
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Hello - I have a slight mis-undestanding on what can be made parallel in Tellerium. I would like to mark this a question.
Let me start from a simple setting. I have a simple gillespie simulation f…
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Dear Samuel,
Togheter with other students I'm currently trying to reproduce and extend part of your study. We're however currently unable to solve a series of issues related to the Spreading_CR pac…
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i imagine folks who work with compartmental models may occasionally want to simulate them stochastically. for example, me :)
david suggested using `adaptivetau` as opposed to implementing the Gille…
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This is not really an issue.
We are using SyMBac for producing training data for fluo imaging/segmentation with Delta. It does seem that Delta is getting confused when all cells in one trench alway…