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There is an error on line 95. When you simulate environments as correlated traits you shouldn't also add varGxE = rep(2, nEnv), as this will add extra (spurious) error to the phenotypes. It will also …
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Hi there,
Sorry, this is my first time posting an issue for an R package so I am unsure what is standard protocol. If you need me to submit a full markdown file then I could probably do that.
I …
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Hi,
In the TrajGWAS documentation (https://openmendel.github.io/TrajGWAS.jl/dev/#GxE-or-other-interactions), the p-value file from jointly testing for G + G*E using the formula testformula=@formula…
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Hi all, thanks for the great work in GEMMA.
I'm trying to do an analysis with a bim genotype file, a phenotype file, and a GxE file. This is the Linux command line:
`~/tools/GEMMA/bin/gemma -g tes…
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**Is your feature request related to a problem? Please describe.**
The 1 covariate GxE model in AlphaSimR results in some extreme differences in the spread of traits at extreme values of the covariat…
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Hello,
when using `gemma` (v0.97) with the `-gxe` parameter to detect interactions with the `-maf` option set to `0.05`, the MAF filtering is done globally, and not per environment.
This results i…
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# config set notify-keyspace-events gxE
return a error
(error) ERR CONFIG subcommand must be one of GET
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A user reported there are many GxE studies indicated in the trait but without the flag set correctly. She said she will send a list, but in the meantime, we should check this and clean up if necessary…
ljwh2 updated
12 months ago
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Hi Mahendra,
first of all i was very much impressed with your work on GxE. Currently i am working on GxE on a huge data set with different variables as compared to your data set.
Kindly help me …
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Which is the best way to implement special validation in the gxe editor ? For some fields we need to use some regexp, and I was going to use the "match" section and an XQuery expression with the match…