-
Dear author,
Previously, I used hapdup to get the diplod assembly based on ```Assembly.fasta```. Dose shasta new version support diploid assembly?
-
Dear @emmanuelparadis,
thank you for maintaining the package pegas.
I'm a vet and doctoral student and I'm currently working with NGS data obtained from parasites. The "problem" is, that the seq…
-
Hi,
I want to use triocanu for haplotype assembly. For hap1, the expected coverage is 12X on a 0.6G genome (P10), while for hap2, the expected coverage is 21X (P48):
```
canu -p F1_trio -d canu_tri…
-
**What is your question?**
@eblerjana I am working on reconstructing a haploid haplotype using the imputed genotypes from PanGenie. Currently, I am using the following commands:
```bash
PanGenie …
gsc74 updated
1 month ago
-
I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
-
Hi,
Thank you for developing this nice tool.
I have obtained hap1.fa and hap2.fa using hifiasm(HiFi +HiC reads). Next, I would like to evaluate the QV and completeness of each haplotype.
Howe…
-
I assembled two haplotype-resolved T2T genomes. When I followed your suggestion to set the parameters and combined the two haplotype genomes into a single FA file for evaluation using GCI, the score w…
-
**Statistics page: (previous issue #29)**
Do we really want to be able to move a round a bar chart by just dragging and dropping, wouldn’t it make more sense to just have a slider to more around hor…
-
Hello,
I have {graph_name}.full.gbz files generated from Cactus Minigraph to map short-read data. According to the tutorial, a filtered graph is more efficient for vg giraffe. Additionally, I notic…
-
Dear metaMDBG team,
I am wondering the difference between rust-mdbg and metaMDBG is the same with Flye and metaFlye. Because essentially, when there are difference species in the sample, especially…