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Dear developers, can you recommend a tool or script for calculating HDR from PureCN outputs?
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![image](https://github.com/user-attachments/assets/fb2bf55f-559b-4d1a-9e93-0170df25e0e6)
MSI und TMB aus MolGen vererben und interpretation wieter auspezifizieren
BRCAness und HRD neu anlegen…
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Dear Mr. J. Teuwen,
I have recently been reviewing your article titled "DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in…
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I was wondering if it could make sense for `cnvkit` to add derived biomarkers such as HRD (integrating loss of heterozygosity (LOH), telomeric-allelic imbalance (TAI), and large-scale state transition…
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Can you provide convenient commands for execution?
Such as
```
git clone https://github.com/broadinstitute/DirectHRD
cd DirectHRD
pip install -r requirements.txt
python download_deps.py
pytho…
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hello,i'm wondering where to find hg19gcpct data? thanks alot
and my data is a panel data with Tumor and Normal ,can i calculate HRD scores?
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Hello, I believe there might be minor tweaking, but the error I am getting is
```
_scarHRD::scar_score("./seqz_inscarhrd.tsv", chr.in.names=FALSE,
+ seqz = FALSE,
+ …
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Is it possible to run this package with other common references (hg19, b37, etc.)?
vymao updated
4 years ago
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### Description of feature
The DNPM KDS draft includes a set of clinically relevant scores which can be calculated and derived from data generated during alignment and variant calling. As a long-term…
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Probably wrapper around https://github.com/sztup/scarHRD
lima1 updated
7 months ago