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### Description of bug
When trying to assemble DNA viral samples using the flags `--metaviral` and `--iontorrent`, spades won't generate any contigs, even when running with positive controls which …
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I know that the development on this only supports upto 14, however I am attempting to get it on the 16 release and I'm having an issue with the build.
```
Determining if the pthread_create exist …
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I'm following instructions provided here: https://hub.docker.com/r/iontorrent/tsbuild/
```
docker pull iontorrent/tsbuild
# build all modules:
docker run -v /home/ionadmin/codes/TS:/src iontorre…
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### Description of the bug
I am attempting to run the ampliseq pipeline on a single sample to test it on my system. I get an error that says:
```
ERROR ~ No such variable: outfile
```
Is there an is…
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### Description of the bug
Hi all,
I'm new in the 16s rRNA seq field.
Our lab used Zymo 16s primer V3-V4 but they refused to provide primer sequence.
They only provide length of primer. FW: 16…
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Although the field experiment/platform in submission-song.rdpc-qa [sequencing_experiment schema](https://submission-song.rdpc-qa.cancercollaboratory.org/schemas/sequencing_experiment?unrenderedOnly=fa…
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Hi,
I'm new to using Spades. I have basecalled my fast5 files with Guppy and trimmed/demuxed with porechop. I now have a fastq file that I want to assemble but keep getting an error. Could someone …
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Hi,
I followed the instructions step by step.
When I come to compiling using
```
sh autogen.sh && ./configure && make
```
I get the error at the end.
```
src/map/tmap_map_driver.o: In funct…
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Minhash supports fastq files. I told PATRIC that my fastq file was a contigs file so I could submit it to similar genome finder. It returned the correct result.
We should add type "reads" to allowa…
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Hello,
I'd like to report a FilterMutectCalls error. It was run using mutect2.wdl with gatk 4.0.12.0.
FilterMutectCalls of gatk 4.0.10.1 succeeded using same input.
Please let me know if there is…