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Hi,
I have issue similar to #388 #49 #563 , but different in one point.
Namely, I am working with diploid plant genome. I have several individuals sequenced with Pacbio hifi. When assembled with hif…
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Dear Authors:
Here is my kmer distribution result from the hifiasm v0.15.4 on ccs hifi reads with default paras. There is no peak and I don't know why would this happen.
I use the hifi data run a…
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I have a k2report file for which i have run bracken for abundance estimation. when i run the bracken i get the below error
$ bracken -d /mnt/e/krakenindexdb/16S_Silva138_20200326/16S_SILVA138_k2d…
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Good afternoon,
I am assembling fish genomes de novo using hifi data and have run into a few issues for a few of my target species (all diploid);
first, to better understand the size and heterozyg…
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Hello,
This is similar to issue#93 but for me it is unsolved yet. I am running hifiasm v 0.16.1-r375 to assemble ~1Gb genome. My hifi fasta file size is about 50Gb . All files are output normally, …
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Dear Authors:
Here is my kmer distribution result from the most recent hifiasm v0.14.5 with default paras. I don't know why would this happen. Also, the N50 is not good either.
Please give some tip…
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I am running `kat gcp` using Snakemake on a cluster and have run into a problem upon what seems to be the completion of the `kat gcp` command.
I am running:
```
rule kat_rawRead_gcp:
params…
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Hi, @chhylp123
Thank you for this wonderful tool for genome assembly.
I have used Hifiasm-0.16.1 (r375) for assembling a Arthropoda genome using about 80G HiFi reads(10X).
But I got a abnormal Km…
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Traceback (most recent call last):
File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 469, in
main()
File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 461, in main
…
afmcc updated
6 years ago
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I built a Kraken1 database and I'm trying to generate the corresponding bracken distribution file.
Everything went well until I got a segmentation fault at STEP 4 (CONVERTING KMER MAPPINGS INTO REA…