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I hoped that passing `--output-multifurcating-tree` for cmaple mode would results in a multifurcating tree, in the way that `--polytomy` does for normal iqtree mode, but apparently it's not working fo…
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Hi,
Thank you for producing and maintaining this package; it gives me a good insight into lineage trending. I have a question: The object g_mst produced by StructDR seems to be an undirected minimu…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1304#issuecomment-2227402013
Sub-lineage of:JN.1
Earliest sequence: EPI_ISL_19205731,France,2024-5-28
Latest sequence: EPI_ISL…
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The lineage tree plotting tends to result in overlaps in the graph when more than two children arise from a fragmentation. This looks to be controlled by the generational depth modifier, but may requi…
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@mirabelle1999
Hi,
please be so kind and check after you uploaded a device tree if it has the chance to build.
For compiling you need at least to change the wrong filenames like aosp_topaz.mk…
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it will be useful for you. consider your phone your twin brother
https://github.com/P-Salik/android_device_realme_RMX1941/tree/lineage-20.0
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the default PhysiCell output misses information to generate evolutionary lineage trees.
it would be good enough when each agent saves information about:
+ parent agent_id
+ simulation time of bir…
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This is the sibling lineage of LF.3.1.1 previously described as Branch 2 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558.
It is still a small lineage but having been sampled i…
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I'm looking over the revised manuscript. The new tree figure is a great improvement and is much easier to follow, particularly alongside the new description of the Algorithm and Concepts in the docume…
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When comparing only Pango lineages, we could show a small tree to visualize their relationships.
For example, if the user is comparing B.1.1.7, BA.1, and BA.2.75 ([see here](https://cov-spectrum.or…