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Hello @tanghaibao @vivekkrish @orionzhou
Recently I have read the literature (https://onlinelibrary.wiley.com/doi/10.1111/jse.12850) and conducted research on LTR- retrotransposon.
In this article,…
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Hello @BenjaminSchwessinger @[jannafierst](https://github.com/jannafierst)
Recently I have read the literature (https://onlinelibrary.wiley.com/doi/10.1111/jse.12850) and conducted research on LTR-…
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Dear @brianjohnhaas
Trinity is a very nice tool packed with many features. We have been using it frequently in the past. Now one question: Trinity can measure gene expression, it seems roughly usi…
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Hi Shujun,
I would like to use EDTA for animal genomes. What should I prepare to make EDTA suitable for Animal genomes?
Thanks very much.
Wang Jinpeng
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Hello author
I used the LTR-retriever to extract the transposon of a species, assuming a GFF file named 1.fna.mod.ltr.gff3 was generated. Assume that the genome GFF file of the species is GCA_0097461…
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Hello again, so could you help me with one issue with LTR_struct?
###############
Running LtrHarvest... : 00:39:33 (hh:mm:ss) Elapsed Time
Running Ltr_retriever...LTRPipeline: **No results a…
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Hi, I'm in the process of updating to 2.9.9 from 2.9.0 and I'm seeing some odd outputs:
```
~/projects/LTR_retriever$ ./LTR_retriever -genome dmel-smaller.fa -inharvest raw-struct-results.txt
###…
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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…
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Dear @oushujun ,
Thank you for developing this useful tool. I have run it successfully and found that SINEs and LINEs could't be identified based on structure features. However, we didn't have such T…
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- [x] Download the Genome from NCBI
GCF_000767585.1_PRJNA234474_Ca_dromedarius_V1.0_genomic.fna.gz`
### LTR-Detection
- [x] **Create index** _find pairs of maximal exact direct repeats that a…