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The version 3.2.0 update says that the "possibility to store only k-mers in the database (no counters)" was implemented; however, I don't see any documentation on how to do this. I m building some ve…
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Hi,
We have run annotate_hits_pyseer to annotate k-mers.,but we are not sure if it has mapping quality when annotating k-mers? Do you have any suggestions?
Thank you in advance!
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Hi , I followed the guide strictly, but I get this error, I don't know what's causing it? Thank you!
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**Submitting author:** @pierrepeterlongo (Pierre Peterlongo)
**Repository:** https://github.com/pierrepeterlongo/back_to_sequences/
**Branch with paper.md** (empty if default branch):
**Version:** v0…
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Hi,
We try to list all possible kmers from a pair of fastq files using:
```
kmc \
-k31 -m128 -ci1 -cs4294967295 -cx1e13 -t36 \
-jOutput.json \
@files.lst \
test.kmer.output \
`pwd`/kmc…
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Hi,
I was wondering if it is possible to include an argument in kmer-db that allows the inclusion of non-canonical k-mers in the construction and querying of databases. Thus far I have been using a m…
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Why not allow gapped k-mers exists to search the best LCA?
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I using the latest kmc code but i can't count kmer on fastq file. It work on fasta
```
$cat r1_test.fq
@0|Chromosome|4051100|4051286/2 BX:Z:CGACACGGTTTGGGCC
AAACCCAACCAC
+
FFFFFFFFFFFF
$kmc …
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It's unclear to me what is the difference betwen `MinimizerQueue` and `ImplicitMinimizerQueue`.
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Hi! Thanks for the great tool! I was wondering if one could get the genomic location of subgenome-specific TE or TE k-mer. My idea is to take a look at coding regions that are upstream and downstream …