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Determine which ontologies to use for transcriptomics data (meta data templates)
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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Description:
Proactive onboarding of services and models, with focus on SPARC and ANS neuroscience needs (e.g., by contacting authors of SPARC-relevant modeling publications).
Deliverable:
Servi…
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Good day,
I am eager to test this excellent tool on our data. I have seen in the tutorial and demo data that the vignette uses only one bulk RNA sample as well as an ST experiment.
Is it possib…
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Hello there
I did an analysis via CPDB for a comprehensive list of cells in my dataset out of a spatial transcriptomics analysis.
Now, I have a csv file out of the analysis shows the PPI between …
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Dear Professor,
I have a question how can I use the 6.5 PCW human embryonic heart dataset in another Model? For example, I want to use the CARD technique, it requires two types of input data:
1. s…
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Matching use cases
1. Transcriptome catalogs (MOCK, modeled after GEO, etc.)
2. Variant & clinical information sources (MOCK, modeled after LUMC, RUMC, Sweden-FEGA)
3. Public resources linkable to ge…
mroos updated
5 months ago
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I noticed some recent updates to the package and just couldn't wait to try it out. I used some old script I have with spatial data (not too old!) but got the following warning message which seemed new…
mvfki updated
9 months ago
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Hi,
I got an error when running RunNiches() stating that
Compute edgelist based on mutual nearest neighbors.
Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_versio…
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Dear Colleagues,
I read with much interest your paper on the IBD Transcriptome and Metatranscriptome Meta-Analysis (IBD TaMMA) platform. However I was surprised that the eukaryotes did not include …