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**Submitting author:** @JeanMainguy (Jean Mainguy)
**Repository:** https://github.com/genotoul-bioinfo/Binette
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @arf…
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Hello.
I'm using Eggnog to annotate MAGs (metagenome assembled genomes). I'm very excited about the output annotations, but I need the .faa (fasta amino acid) output. Is there a straight forward way…
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Hi I am getting the following error:
sample1.fastq.gz is either empty or contains multiple entries with the same identifier. Please check your input FASTA file and execute genomad annotate again. …
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[CheckV: assessing the quality of metagenome-assembled viral genomes](https://www.biorxiv.org/content/10.1101/2020.05.06.081778v1?rss=1)
- not directly relevant, but perhaps inspirational reading
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I wonder if it is possible to use pangraph for metagenome assembled genomes which are usually highly fragmented.
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Hi Stephen,
I was wondering if you have the sample-specific metagenomes that you assembled available. These would be of great use to me in addition to the representative genomes.
Thank you,
Mat…
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https://github.com/EBI-Metagenomics/genomes-pipeline/blob/853487f6dda1420fd8b6b41dd4aff5c8540c7e37/bin/fetch_ena.py#L66
The method above returns nothing. I believe it's because `metagenome_source` …
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Hello, I have a question, is there a best way to calculate ANI between two (metagenome assembled) draft genomes?
I've seen using `mummer -m `with mummer v3. Or take the weighted average over all t…
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iHMP? or something else?
it'd be nice if it had a specific set of genome(s)... could do the hu et al one
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Hello,
I first wanted to thank you again for the software.
My goal is to **characterize the metagenome** of three lichens. I created my BlobDirs, I grouped my contigs into bins and I visualised …