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Thanks for the nice tool! Is it possible for this tool run against the customed microbial genomes?
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Hi,
Thank you for the fantastic work. However i feel confused about some details:
1. I check the **TableS2**, the sums of each sample are different, like this:
![image](https://github.com/yge15/…
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Dear @yinlabniu,
Thank you again for a very important tool to annotate CAZymes and identify CGCs in the microbial genomes of interest.
I am interested in examining how complete are the CGCs in my …
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Because this pipeline is going to be used by multiple project that have a variety of different host organisms it is needed to create a database that contains all these hosts. In the first place to be …
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### Description of feature
Add the HOSTILE tool for host decontamination
https://www.biorxiv.org/content/10.1101/2023.07.04.547735v1
https://github.com/bede/hostile
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in theory, as we sequence more and more microbial genomes, charcoal should become better and better (balanced a bit by database size and the potential need to dereplicate through species clusters)
…
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There is a tool with ID "img" in bio.tools ("Integrated Microbial Genomes (IMG)"). But trying to access this tool through its URL https://bio.tools/img will redirect us to a directory of images https:…
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Hello! I saw your recent preprint, "Scalable estimation of microbial co-occurrence networks with Variational Autoencoders" and I'm hopeful your method may solve my issues, but I wanted to touch base t…
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I have difficulty figuring out how is the coverage calculation done for the N, C, and S cycles.
Here is an example
I have 38 MAGs that I input as a community and 6 genomes listed as having the abi…
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The setup files `rhimgCAMI2_setup.tar.gz` and the genomes `rhimgCAMI2_genomes.tar.gz` used for the _A. thaliana_ rhizosphere mock data have been downloaded.
- `wget -P /path/ https://frl.publisso.d…