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I did a fresh install of flye with micromamba. Python is 3.9.
I get a core dump on the minimap2 step. Any suggestions?
Thanks!
less /Spawn/Isolates/LT001001/results_flye_correct/10-consensu…
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Dear author:
Thank you very much for developing such a great software. For various reasons, I am unable to use the automated process of wf-pore-c. I just want to align pore-c data with the refer…
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Hi,
Is there a way to dump the `canonical minimizers` or `superKmers` without having to reach the final stage? I have read the API docs but didn't find an exposed class to achieve it. I would appre…
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Hi!
I would like to know how to include kraken2's report column "Number of distinct minimizers in read data associated with this taxon" in Bracken's report file so as to identify false positives.
A…
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Hello, I have a hypermemory problem:
The error message is as follows:
==============================================================
[M::ha_hist_line] rest: ***************************************…
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Ensembling/stacking of classifiers seems to be the winning strategy for most kaggle competitions.
It would be interesting to investigate how to construct an "ensemble" of minimizers and then evaluate…
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As discussed today, it may be a good idea to incorporate some specialized/customized minimizers for variational circuits.
Here I leave some references where they are introduced or benchmarked.
[…
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Once the Dash app is running, if one plays with the Dash plot in either accuracy or runtime table (i.e., removing and adding minimizers), and then switches to the compare table, the colors in two plot…
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Hi Kraken2 developers/community,
I recently built a large Kraken2 database with genomes from the NCBI RefSeq database. I added genomes regardless of assembly level and limited it to 1 assembly per …