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Hello,
I'm currently working on Mycobacterium caprae and Mycobacterium bovis. These subspecies of the M. tuberculosis complex are phylogenetically very similar, so the task of identifying them is n…
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Hi!
As far as I am concerned, tb-profiler database contains all the mutations that confer drug resistance listed in the WHO catalogue.
However, the following mutation is not found in the tbdb https:…
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i installed UVP and Run.Then it terminates just after printing the following
Validating Input file.
Running Kraken.
It doesn't give any kind of error message.It just quit
![uvp](https://user-imag…
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Looking at the Bracken source code, I see that counts do get down to the level of individual genomes. But this level of count data is not reported to the user.
Seems like it wouldn't be that much a…
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## Expected Behavior
A sequence search that match itself in target db should report 100% identity
## Current Behavior
Identity reported is 91.4%:
```
P30340_1-122 UniRef90_P30340 0.914 122…
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Hey everyone, I'm Kevin! I'm currently a 2nd year studying B.Com/LLB. I seem to be in the minority of students in the course that aren't studying Science at university. I was looking for an interestin…
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WHO has issued a update of the “Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance”. Will the catalogue file be updated accordingly? Thank you so m…
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WHO has issued a update of the “Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance”. Will the tbdb be updated accordingly? Thank you so much.
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The LOINC code `48176-2|Deprecated Mycobacterium tuberculosis rifAMPin resistance (rpoB) gene [Presence] in Unspecified specimen by NAA with probe detection` is deprecated: https://loinc.org/48176-2/
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