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If refine mzML crashes, there will a problem where refined mzml db entries are not checked and the set of them is marked as "Incomplete" in the interface, which (currently) blocks the analysis. Resolv…
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I am trying to convert a .cdf file from a Shimadzu machine to .mzml to use in GNPS, and when I try, it says that exporting to .mzml requires the openchrom parser, but when you use openchrom it says it…
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- Currently the streamlit implementation only supports MGF files as spectra input
- Theoretically fragannot and fraggraph support input of mzML
- _theoretically_ because not everything works depen…
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Hi, Thanks for the code upload. I'm running this in conda, and keep running into this issue with reading in the mz values and the tolerance values. What were the configurations used to convert your ra…
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A suggestion to add the ability to generate mzIdentML reports through the FragPipe interface.
Issue with Philosopher:
Unsuccessful in using Philosopher with the pipeline mode to generate mzID file…
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Hi XCMS team,
I finally got around trying the and improved XCMS3 interface :-) One thing I quickly noticed is that with some data files I get significantly different amounts of peaks. A small examp…
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Trying to access and plot my total ion chromatogram is not working. It does not seem to recognise it for my data. I exported my data from mzmine 3, and there definitely should be a TIC present. Has an…
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Hello
We plan to use DiaNN to develop a pipeline for processing several hundreds of Thermo RAW files in a regular manner. For this, we think that it's a good practice to use our linux HPC. However,…
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Hi there,
I've noticed that Thermo .Raw files have (in a binary format), useful metadata like the sequence (.sld) information associated with the sample injection, and the used instrument method, a…