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Great tool ! I wonder if taxor can be used to index NCBI nt sequences ? Based on the documentation, taxor build uses the ftp link in the file (third column) to download the reference sequence from NCB…
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:cool:
### :pushpin: Explain the Request
Some GenBank accessions are unable to be downloaded via the command we currently have in the Assembly_fetch workflow:
```
datasets download genome ac…
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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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Hi,
I am using taxonkit lineage, and it works wonderfully so far. But there are a few species it seems not to be finding, despite their presence on the NCBI taxonomy portal.
I am not sure how th…
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Hello everyone,
I am trying to download the standard Kraken2 database and I'm having issues with the rsync_from_ncbi_.pl file. Here is my terminal input and the resulting output and error:
**Inp…
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Hi,
Thank you very much for creating a good tool Ganon, I am using Ganon for taxonomic profiling but my target is not only bacteria and viruses, but also to identify species belonging to algae, fungi…
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Im trying to download the NCBI reference database and keep getting this error. I did force Biopython 1.76 to deal with the BioAlphabet issue, but that is the only modification I made. Thanks in advanc…
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Hi
I have always this error when trying to install NCBI database.
I'm trying to use this oracle VM image.
I run the commands:
wget https://raw.githubusercontent.com/algbioi/ppsplus/master/algbioi/…
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Hi, Thanks a lot for your best HHpred. It is very useful.
When I use the websit version of HHpred: https://toolkit.tuebingen.mpg.de/tools/hhpred
There are a lot of database.
Could you also help t…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.2.0
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2M…