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While I haven't dove too deeply searching the forum and open issues here I see no reference to [NeXML](http://nexml.org). Has the topic of supporting this data format come up prior/is there a discuss…
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Is NexML incorporated as part of Mesquite 3.0?
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If I export nexml from the curator and then try to import it into a new study
I get the error:
{"description": "'Repeated trees element id "trees1"'", "error": 1}
It's sort of an unusual thing to…
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* [ ] Create a new Download subclass to reflect this action
* [ ] Add UI element, and possibly corresponding background task to build the package.
* [ ] Check to see/Implment that Zip subclass d…
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Downloading a Study as NexML can result in an invalid XML file.
The Study I tried was 1144 ( http://www.treebase.org/treebase-web/search/study/summary.html?id=1144 ).
I tried the online validator a…
ghost updated
7 years ago
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@balhoff When I run the nexml files that Wasila sent me (https://github.com/phenoscape/scate/tree/master/data)
through ontotrace through the validator (http://www.nexml.org/phylows/validator) I get …
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The primary output of `ami-phylo` is NEXML and the current output validates against nexml.org.
I propose we use NEXML to aggregate per-OTU logging information.
```
read tree format (e.g. ijsem.x…
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Author Name: **Chris Fields** (@cjfields)
Original Redmine Issue: 3208, https://redmine.open-bio.org/issues/3208
Original Date: 2011-04-19
Original Assignee: Bioperl Guts
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Per the subject.
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What metadata should be included in the export?
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HI, I have the strong suspicion that I am reporting this issue to the wrong repo. Sorry about that, I'm not sure which repo stores the tool that creates these files...
For files like: https://raw.git…