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https://hstrat.readthedocs.io/en/latest/_autosummary/hstrat.phylogenetic_inference.tree.build_tree_nj.html#hstrat.phylogenetic_inference.tree.build_tree_nj
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Hi,
My question is not really aboat gotree, just want to know do you have any idea to deal with those negative distance branches on NJ tree?
Replace all negative value using 0, or all branches p…
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- [ ] install
- [ ] quickstart (core functionality, demo using alignment, get a tree, display the tree)
- [ ] what's available
- [ ] demo running in parallel in a notebook (add a few apps to filter…
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There is a likely recombinant branch in the #1729 branch (>> Pango # 2755) with 75S 475V that exchanged S:R190S for S:A435S
Two Breakpoints between S:76 (because of S:G75S) and S:811 (because of A…
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I used the tpm2-openssl https://github.com/tpm2-software/tpm2-openssl/tree/master with openssl to generate a CSR for signing. The below command worked fine
`openssl req -new -newkey rsa:2048 -out t…
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Hi,
I have two ancient samples (7X and 13X) . In NJ tree , they get together with groupA . But in Outgroup f3 statistic ,the groupB's f_3 value is higher than gourpA ,How to explain the result ?
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ghost updated
7 years ago
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### Übung 3
# 1. schauen, ob packages schon installiert
installed.packages()
# 2. benötigte Packages istallieren
install.packages(ape)
install.packages(phangorn)
# 3. Packages laden
lib…
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[Turbinicarpus ss_26 paupout.txt](https://github.com/ms609/TreeSearch/files/4007540/Turbinicarpus.ss_26.paupout.txt)
I have tested the package with some data (attached).
Here the code that caus…
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**Version**
poppunk version: 2.5.0
**Commands**
poppunk_assign --db GPS_v4 --query qfile.txt --output poppunk_clusters --threads 8 --external-clustering meta.csv --update-db
poppunk_visualise …
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Hello,
I want to use treeWAS for Bacterial GWAS, and my data is in the form of SNPs and gene presence /absence, but when I run the program I get the (Error in tree.reconstruct(genotype, method = …