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We want to compute statistics from the FOV-scale zarr store and store it with patch-scale zarr store, which dataloader will parse.
The process for this is:
- Compute statistics per FOV (not patch…
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When this was still named `faim-hcs`, we had this code to compute histograms and add it to the zarr `attrs`:
https://github.com/fmi-faim/faim-ipa/blob/7594dc679baef9715ec4d193557dae4c617372f2/src/f…
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Using an issue on this repo as a high-level
* [ ] https://github.com/ome/omero-py/pull/414
* [ ] https://github.com/ome/omero-figure/pull/568
* [ ] https://github.com/ome/ome-zarr-py/pull/385
*…
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In https://github.com/ome/napari-ome-zarr/pull/107 I had to pin the version of `ome-zarr` to get the tests to pass; this should be fixed so `napari-ome-zarr` works with the latest version of `ome-zarr…
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To my understanding, `zarr` supports rewriting with the `mode= "a"`. However, it is not supported by `ome-zarr-py`.
# Example code
```python
import zarr
import ome_zarr.io, ome_zarr.writer
v…
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The 3D web viewer is able to automatically render a low resolution version of any OME ZARR by checking the "manifest" file inside the OME ZARRs highest level directory and then rendering the path to t…
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Within #671, it appears that the MIP-images zattrs do not include `wavelength_id` in the `omero` metadata.
Here is how this leads to a cellpose-task error:
```python traceback
TASK ERROR: Task na…
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I've been experimenting with a OME-Zarr image reader class over here: https://github.com/fractal-analytics-platform/napari-ome-zarr-navigator/blob/roi_loader/src/napari_ome_zarr_navigator/ome_zarr_ima…
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please, How to convert TB size TIFF stack into OME-zarr
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In 0.4.19 there were a number of deprecations to labels kwargs:
https://github.com/napari/napari/pull/6542
In 0.5.0 they are removed:
https://github.com/napari/napari/pull/6641
This results in a…