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Evaluate this file: downloads/alliance_genome/current/ORTHOLOGY-ALLIANCE_COMBINED.tsv
Add as new dataset either in this release or the next
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Thank you so much for your tool! I have genome files and annotation GFF files for two species, and I mainly want to use TOGA to identify orthologs between them. However, when I run it, the gene IDs an…
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Path:
`/api/expressions/{bel}/orthologs`
`{bel}` term example:
- `p(HGNC:AKT1)`
`{bel}` statement example:
- `p(HGNC:AKT1) => bp(GOBP:"apoptotic process")`
extra parameters
- `{namespace_preferenc…
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Hi,
Thank you for the software,
I have observed that for some genes some targets isoforms are absent for the orthology classification file,
Have you already observed that ? Is there a reason…
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Human SHH page shows annotated to 12 orthologs; mouse shh page is annotated to 13 orthologs; dog to 4 orthologs etc. This is a bit unfortunately not as useful as it could be. In all cases, we are prob…
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Please briefly describe your problem and what output you expect. If you have a question, please don't use this form.
Instead, ask on our [Community Forum](https://github.com/icbi-lab/immunedeconv/dis…
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STATUS: DRAFT
Use case:Queries that can unify Gene expression/function/markers whether they are proteins, genes or transcripts.
TBD:
- Do we simply unify proteins/transcripts/genes or do we ma…
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Hello,
Thanks for developing such useful tools. I want to use AGORA with providing the orthologous groups files and not the trees; I have a question regarding these orthology groups. I used Orthofi…
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Basic example (provided by Anushya):
http://panthertest2.usc.edu/services/ortholog/matchOrtho.jsp?format=json&organism=9606&targetOrganism=10090,9913,83333&geneInputList=brca1&orthologType=all
I…
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Currently, downloading and storing resources is quite bare bones:
https://github.com/saezlab/liana-py/blob/main/liana/resource/_orthology.py
https://github.com/saezlab/liana-py/blob/main/liana/reso…