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Hi,
Recently, I finished developing a pipeline using nextflow (v24.04.3), but I am having problems with nf-schema (>=2.0.0).
I have 2 conflicting values in the pipeline: pfam_release (Default v…
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- [x] Pfam filter button is now a bit crazy (probably related to the change @bobular recently made allowing `ReactNode` rendering
- [ ] filters freeze up with multiple pfam filters active (explanatio…
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Placeholder ticket for updating
- KEGG db
- KEGG product lookup tables
- Pfam database
- Pfam product lookup tables
Marcel to provide finalized info.
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I don't think this is likely anything to do with the new release, it might be to do with the way the pipeline works
Systematic ID | Gene name | Product description
-- | -- | --
SPAPB8E5.02c |…
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Hello,
when I installed `5.71-102.0`, I had to run the following `hmmpress` commands before `python3 setup.py interproscan.properties` otherwise I would run in errors. Is that expected?
```
hm…
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Good Afternoon,
I've started putting together a dockerfile with all the dependencies required in the repo. It looks like there are a few dependencies without arm64 support, so for now it might need…
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Hi PlasX team,
Thank you for providing this insightful software. I could manage to run PlasX over my data (set of open reading frames) with the Pfam database. However, when I try to include the dow…
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Hi,
first thanks for creating this repo, it's really useful.
One question: It's not clear to me how I can go back to the original Pfam ID for a sequence from the LMDB databases. The reason I wan…
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For pfam, there are some labels in the validation/test that are not present in the training set
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I wanted to bring this issue to your attention
I use `pfam_scan.pl ` (conda) on the command line and input the results with `analyzePFAM()`. I am using IsoQuant data.
I get this error:
```
Error i…