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Hi Chi!
I am attempting to use microeco for a few different microbiome applications. I extracted the microtable components from a phyloseq object I frequently use. Both the tax and otu tables were …
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Hi there,
I have run into a weird issue using phyloseq. I am working with two objects, ps1919 with 35 samples and ps1144 with 185 samples. When I merge the two, they are deleting 10 cases, since the…
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* humann nucleotide and protein database: https://github.com/galaxyproject/usegalaxy-tools/issues/855 (missing on AU/ORG)
* kraken2 - 5 toturials, multiple DBs - should all be updated to 2024 version…
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Hi,
I am trying to get the CAP1, CAP2 and bacterial loading values from a capscale.phyloseq ordination object and look at bacterial contributions to beta-diversity.
```
ord
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Hi,
Thanks for this package! I wonder if you plan to adapt it for phyloseq object?
Cheers
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![image](https://user-images.githubusercontent.com/110771717/184404416-6c382fb2-93cd-49bc-9e4e-f427620fe1b8.png)
Please assist with installing phyloseq#Install phyloseq - RUN ONLY THE FIRST TIME
> i…
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Given the challenge of formatting all of the data exactly as required for `mbImpute()`:
* condition
* vector in the same order as the sample order used for the OTU table
* OTU
* "wide" matr…
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Hi Chi,
This may be a naive question and tried a couple of things. We are trying to subset the microtable after querying the FungalTraits database to a specific lifestyle: "plant_pathogens". But …
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Hey guys. I hope you're doing fine.
I'm trying to create the phyloseq object in FROGS for further analysis. Every time I get the same error :
"Your biom input file is not comming from FROGS and has…
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Hello,
Would it be possible to have phyloseq support or an easy way of building a new gneiss object based on a phyloseq object.
Thanks