-
Thanks for a great easy to use tool. I've finally reached the step where I would like to do a Gene Centric Noncoding conditional analysis on some select rare variants I identified in my data set.
As…
-
Dear Team,
I am calculating Partition heritability , but I am getting error of "parsing annotation error". Can you please help me with this? Here is my command:
GWAS trait: PASS.Bipolar_Disorder_AL…
-
The result of the runVariantProm.sh safes the lines from the Input-VCF
Now the mutations should be analysed
Desired output:
For each mutation, save the patiented ID that have and do not have th…
-
Hello,
I was reviewing the script in your repository and I came across a line where null="null.bed" is assigned. I'm trying to understand the purpose of this file and whether it needs to be created…
-
I've been using `ProjecTILs` and the CD4/CD8 human T cell reference atlases in some scRNA-seq work lately and it has been very useful for us. I wonder whether you or @ncborcherding (via https://github…
-
Integrate Arabidopsis transcription factor database into the knowledge network. Visualize the information as part of the gene-evidence networks (see email trail below).
#
From: Richard Barker
Se…
-
-
Hello,
I have defined annotation features - promoter and enhancer lists. I used them with Hi-C data trying to find enhancer-promoter pairs. My Hi-C data ranges were 10kb in size. Later I repeated t…
-
Hi~
I got my data(.bam file) at http://atlas.gs.washington.edu/mouse-atac/data/. And I generated snap file using the bam file according to your instruction.
But I don't have a CSV file tha…
-
Hi there,
Thanks for keeping up with my questions. As bicycle is able to from differential analysis between two different groups i.e treatment vs control. I wanted to know if bicycle can perform com…