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From Jason:
Is the tool very specific for only the NCBI DB format?
Problem: is organism reliably identified in the headers of proteins?
Retool for Uniprot protein headers? These seem to always con…
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Hello, I want to use padloc-2.0.0 with the fna option it works well but when I want to to use it with annotated proteins with the --faa and --gff options I have this issue ERROR >> 3 protein sequence …
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Hey ! Thank for your tool :)
I am looking for gene involved in iron oxydation in genomes and MAGs. When Cyc2 is found there are not proteins sequences associated. It is the only gene for which it …
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Thank you for developing Chroma. Chroma is such an excellent generative AI tool for de novo protein design.
I would like to inquire about how one can use Chroma to design new functional proteins (no…
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After making the protein synthesis function we need to make some sort of heuristic that compares the old genome to the new one. Basically we compare the proteins made by the previous genome and the al…
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Hi,
I noticed that there are only training scripts for property-guided and adsorbate-catalyst but no scripts for training the protein and the protein-ligand model. Would you please kindly fix the i…
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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…
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Hello,
Thanks for the great tool. I'm excited to use ProtTrans for generating protein sequences, but I'm getting an index error in the example notebook (https://github.com/agemagician/ProtTrans/blo…
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PDB ID: 3AG9
in pymol:
![1719390982893](https://github.com/molstar/molstar/assets/17419987/aa3f27dd-f410-4c77-9ab5-0559587791e0)
in molstar:
![1719391100858](https://github.com/molstar/m…
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Dear OpenFE team.
Thanks for this awesome work.
This is related to https://github.com/OpenFreeEnergy/openfe/issues/633 https://github.com/OpenFreeEnergy/openfe/issues/634 and https://github.com/Open…