-
Volunteers solicited to tackle integration of usearch into [QIIME](https://qiime2.org/). I'm guessing this will be straightforward by staring from the VSEARCH modules. If you'd like to take this on, p…
-
-
See the discussion [here](https://github.com/biocore/songbird/issues/166#issuecomment-1518491954).
Option 1: adjust the "system requirements" section (maybe put this beforehand, and just have the s…
-
**Improvement Description**
**Current Behavior**
`qiime demux summarize --p-n 5000 ...`
In this plugin, --p-n means
>The number of sequences that should be selected at
…
-
**Addition Description**
It would be useful to bin reads by primer prior to primer removal. I'd like to separate a single FASTQ-based artifact (containing several different primers) into multiple out…
-
I tried to load example files "distance.qza" and "ordination.qza" from [QIIME/DEICODE tutorial](https://library.qiime2.org/plugins/deicode/19/).
After downloading them I did in R:
```
distance…
-
This seems to work pretty well with PacBio and Loop full length 16S runs and the full-length trained data. On our local cluster using the QIIME2 output from the pipeline:
```
module load QIIME2/2…
-
Hi @nickallsing @nallsing-salk
Very interesting research you guys did. I was trying to replicate your methodology but then I figured there were no qiime analysis scripts. I managed to import the mod…
-
Updates will be needed to:
- https://github.com/qiime2/distributions/actions/workflows/release-docker.yaml
- https://github.com/qiime2/distributions/blob/dev/Makefile
- and a new Dockerfile will…
-
Dear developers
Thank you for maintaining and updating the repository.
I am facing some issues using singularity images during importing sequences into qiime2.
It seems that the qiime2 installation…