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This is great! Thank you for this study! This has been very helpful. Any plans to do something for ribosomal genes?
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NCBIGene:6052 doesn't have a label, but it does have one at https://www.ncbi.nlm.nih.gov/gene/?term=6052
It also has name and label information in `gene_info.gz`:
```
#tax_id GeneID Symbol Lo…
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At some point we may want to make a more comprehensive list of barcoding genes and their synonyms (also for use in the sequence ID tool, etc.)
Starting here (with a bit of help from AI):
[edited…
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So we recently decided to change the collection of SCGs in anvi'o that are used to infer taxonomy of genomes rapidly. The SCG data are coming from the GTDB, and the purpose and the utility of this fun…
meren updated
4 months ago
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It seems that the ribosomal_models are not available from the provided link anymore:
```
wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/rfam_models/ribosomal_models/RF*.c…
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Hello, I'm trying to calculate CU for ribosomal genes, but it only shows "self".
`milc
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When looking for very short sequences in a recent BLAST nt database retrieved using `blastdbcmd`, I have found that some of these FASTA sequences (and many others not so short) have a very long header…
khyox updated
8 months ago
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code :
protein_description = struct.getValue('pdbx_descriptor')
protein_description = protein_description.replace('\n', ' ')
protein_description = protein_descri…
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SRP-dependent cotranslational protein targeting to membrane
has lots of ribosomeal proteins annotated to it by Reactome TAS.
But the ribosome is the target of the targeting pathway
(this …
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Hi,
I have installed singlem with conda, and running the below command:
`singlem pipe --forward /home/ps897/sharing/pmb_study/fastq_files/SQ8353_1.fastq.gz --reverse /home/ps897/sharing/pmb_study/…