-
Hello,
I work with small marine animals and I have generated five single HiFi libraries from the same species. To avoid issues with the assemblies (heterozigosity, different haplotypes), I decided …
-
First of all, I'd like to thank you for the amazing work done!
Secondly, I'm working on a fungal species with very high levels of chromosomal polymorphism and large translocations (of Mbp), and I alr…
-
Hello,
I would like to use QuarTeT GapFiller to fill gaps in my Clarias macrocephalus assembly chromosomes using unplaced scaffolds. I have mapped these unplaced scaffolds to a closely related specie…
-
### Description of feature
- https://github.com/vgl-hub/gfastats
-
Hi all,
I'm using paired-end assembly on GAGE-b MiSeq dataset. (--pe-1 r1.fastq --p2-2 r2.fastq)
In the log file, I found "**Skipping processing of scaffolds (empty file)**" and the output there…
-
Hi Zhou:
After running yahs, I have gotten worse assembly metrics than with the hifiasm-only assembly. The number of genome scaffolds has increased from 1,200 to 9,500, the scaffold N50s have decreas…
-
### Description of the bug
- Add sequence labels to the contact map.
### Command used and terminal output
_No response_
### Relevant files
_No response_
### System information
plant-food-resear…
-
Hello Xiaofei,
I have used HapHic at MAPQ1 NM < 3 as explained in the front matter page, the initial contigs were from the p_utg.fa and the --gfa file used was the corresponding gfa file.
![imag…
-
Hello!
I have got a de novo genome assembly from Illumina PE sequencing. This assembly has got 8.7 million scaffolds in fasta format. I splitted this fasta file to multiple fasta files. One fasta f…
-
---
Author Name: **Florent Angly** (@fangly)
Original Redmine Issue: 2370, https://redmine.open-bio.org/issues/2370
Original Date: 2007-09-21
Original Assignee: Bioperl Guts
---
CVS version…
The m…