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Hi,
Thanks for developing such an excellent tool for single-cell genomics. I am wondering whether you could provide the processing pipeline for Easysci-ATAC-seq.
Thanks.
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I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
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Hi,
I did not find the answer to this question. And I am not sure if this is something reasonable to do.
Can I use single cell data generated by SmartSeq as a normal reference to infer CNVs on 10x g…
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https://doi.org/10.1101/gr.190595.115
# Authors
Trapnell, C.
# Year
2015
# Abstract
> A revolution in cellular measurement technology is under way: For the first time, we have the a…
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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### Context
We are encountering a new issue with resurveying requested experiments on the staging environment.
First we queued a large batch of requested experiments. These failed with miscellan…
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ENCODE folks suggested this was a need. What are the current bottlenecks? Speed? ANalytical flexibility?
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Hello everyone,
I cannot figure out where I go wrong, but I get no mapped reads from 10x fastq files that I downloaded from SRA.
example:
https://www.ncbi.nlm.nih.gov/sra/SRX8976950
I used…
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## Description
In the context of demultiplexing, I have identified 7 different Illumina flow cell cases that share many characteristics:
- HiSeqX single index
- HiSeqX double index
- HiSeq2500 d…