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[WSI directory](https://dsa.rc.ufl.edu/#collection/66844a54050c5f92f05d9f63/folder/668567806b968422781c67f3)
[Batch process](https://dsa.rc.ufl.edu/#job/668b31f0dbe4a8eb5249b310)
[Failed job](https:…
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Hi, I am trying to extract C16 raw patches using hs2p with below configurations:
```
csv: 'camelyon16.csv' # path to the .csv / .txt file containing slides paths
output_dir: '/vast/WSI_datasets…
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Thanks for providing a really useful tool.
I have a wsinfer installation with both `openslide` and `tiffslide`. When I select tiffslide on the command line, it looks like my input file is still op…
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I have been using the tif images to create the heatmaps for my images, Below is the configuration that I am using.
```
exp_arguments:
# number of classes
n_classes: 2
# name tag for sav…
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**Is your feature request related to a problem? Please describe.**
When I use the H5 writer to store the intermediate segmentation outputs, they create enormous files. Check below for the h5 files ah…
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Image display data refuses to update when an image is opened with segmentation. The image must be reselected in the 'Files' tab in order to allow display data to be updated.
![Capturenew](https:/…
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In this issue, I use the segmentation of the lesions on the spinal cord after cropping the images (issue #37 ).
The analysis of the segmentations accounts for the following:
- [x] Identifying a …
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Hi,
Great package/script.
I am running your code like so:
```
python3 ~/git/PyHIST/pyhist.py --content-threshold 0.05 --patch-size 64 --output-downsample 16 --info "verbose" --save-tilecros…
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Hi,
Thank you for putting together this model and sharing the data! I want to run this TLS HookNet on my own data which is aperio pyramidal svs files. However, when I try to resample the images t…
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![image](https://user-images.githubusercontent.com/26381972/61181766-6d780280-a665-11e9-9080-6a2f4cbd1ecd.png)
### Semantic Segmentation
- No objects, just pixels
- Input: Image
- Output: the …
hon9g updated
5 years ago