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Hi,
To run on the data, `https://github.com/kharchenkolab/BaysorAnalysis/tree/master/data`, do you have instructions on how to run baysor on these samples? I am unable to reproduce the figures from…
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Hello, recently I used the Giotto developed by you. I get a gitto object according to (https://rubd.github.io/Giotto_site/articles/mouse_merFISH_preoptic_region_200909.html ) website tutorial and inst…
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Hello, the file smFISH__gene_key__new.tab is missing in get_sce_smFISH_genes. I can't find it on the website you provided. Can you provide it?
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Currently, we represent smFISH codebooks as follows:
```python
In [6]: smfish
Out[6]:
{
f…
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These assays are in CELLxGENE (some are still private) but not addressed yet by the Census schema as included or explicitly excluded
```
10x transcription profiling
SORT-seq
CEL-seq
in situ seque…
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Right now we can generate smFISH and ISS codebooks, we should add the ability to add MERFISH codes as well.
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> As an exFISH Developer, I want starfish to provide an example of the processing of a single field of view of exFISH data so that I can establish it matches analysis done with my own tools.
We ha…
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Dear starfish developers,
Firstly, thank you for creating such a useful tool for spot detection and decode analysis.
It is said that the spot finding method "BlobDetector" can work in 3D and the spo…
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I do not know why but sometime one .png layer does not load entirely or does display att all.
![Capture du 2021-02-12 08-07-33](https://user-images.githubusercontent.com/40570554/107741272-22284900-6…
tdefa updated
3 years ago
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Hello!
I have some seqFISH data from Spatial Genomics generated by their 'genePS' system. I was wondering if anyone had some code to import this data into a SpatialExperiment S4 R/Bioconductor clas…