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Hello, I'm one of the maintainers of [ark-analysis](https://github.com/angelolab/ark-analysis) and this is shaping up to be a great modernized toolkit for spatial proteomics. Are contributions welcome…
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Hi.
I have data from a spatial proteomics experiment in the format shown below, which just contains x-y co-ordinates, intensity and mz values.
I would like to read this into an SPE object. How cou…
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@fuerzhou Thanks for putting in so much work on spatial data analysis!
I am trying to process my spatial proteomics dataset, which consists of over 150 processed IMC images. Therefore my anndata ob…
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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Hello,
Thank you for creating this great workflow. I am trying to analyze my MERSCOPE data using this tool. After successfully installing the program when I run
```
import sparrow as sp
```
it g…
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This is a tracking issue for some of the current issues when having a SpatialImage of circa >10 channels in SpatialData:
- [ ] **Vizarr, Avivator, Vitessce fail when loading SpatialImage**
- T…
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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### Report
The installation is not working as expected, and I am not able to run tutorial imports correctly (especifically lightning).
I think that I am not able to get a stable env going, any hel…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ZheFrench/BulkSignalR
Confirm the following by ed…
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# 时间表
# 演讲者
![people](https://user-images.githubuserconten…