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I was going through the model in cobrapy and doing some sensibility checked.
And I noted their were 1161 unique uniprot identifers, but 1162 unique gene ids.
So i went looking closer to see what was…
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I think I worked out the problem with the ID mapper.
It looks like the ID mapper currently works like this:
From ID ---> Internal anchor ID (UniProtKB Canonical Ac) ---> To ID: Canonical protein …
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Hello -- just learning and may not know sytack -- but the example
```python
up:Disease_Annotation {
a [ up:Disease_Annotation ] ;
up:sequence [ up:Chain_Annotation up:Modified_Sequence ] ;
…
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Sierra was a bit concerned at today's data modeling call to see that the KG2 API returns a **uniprot** 'causes' edge for the query NCBIGene:351 (APP) -- related_to --> HP:0100543 (Cognitive impairment…
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Now we get modifications from UniProt there are exact duplicates. We should filter them like we filter GO, with the PomBase annotations taking priority.
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### Discussed in https://github.com/JRaviLab/MolEvolvR/discussions/24
Originally posted by **jananiravi** July 14, 2024
- [ ] from UniProt to NCBI | `up2ncbi`
- [ ] NCBI to UniProt | `ncbi2up…
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https://api.tst.glygen.org/supersearch/list?query=
{"id":"09a7c68179c78b465dc37c421e7c337a","offset":1,"sort":"hit_score","limit":20,"order":"desc","filters":[],"columns":[]}
https://api.tst.glyge…
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**Is your feature request related to a problem? Please describe.**
For the RDF model, I intend to model PPIs from StringDB as `:has_participant :some protein` for each involved protein.
**Describe…
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### Description of feature
I see that the following code is used to fetch uniprot metadata fields.
```
python ProteinCartography/fetch_uniprot_metadata.py \
--input {input} …
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In the function section of the protein pages, the HAMAP link (e.g. "MF_04099" in the image below) is not working
https://www.glygen.org/protein/P0DTC2-1#Function
![image](https://github.com/use…