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Add vcf file command
Add welcome command
Add audio to text command***
Add onlyadmin command
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Hi,
I would like to know what the vcf requirements are? Can it be .gz? Should previously filtering for only biallelic loci be done? I get a core dumped error using a vcf.gz with 7 individuals for a …
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**Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.**
Would it be possible to view th…
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`test/vcf/4.3/passed/complexfile_passed_000.vcf` has an invalid unstructured header line:
https://github.com/samtools/hts-specs/blob/401e2ec3e8ecf19fa89def74e9c27c1e40df341e/test/vcf/4.3/passed/com…
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The [VCF 4.4 spec](https://samtools.github.io/hts-specs/VCFv4.4.pdf) allows for an initial symbol indicating the phasing of the first allele. For example, `/0/1` is a valid genotype. This allows for p…
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### Code of Conduct
- [X] I have read and agree to the [Code of Conduct](https://github.com/vmware/terraform-provider-vcf/blob/main/CODE_OF_CONDUCT.md).
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Hello! I'm trying to annotated a VCF file produced by CNVkit, using the latest conda version of AnnotSV:
`AnnotSV -SvinputFile /scratch4/nsobrei2/ggama1/somatic_SVs/cnvkit/vcfs/results/file.vcf -an…
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Hi @readmanchiu
For VCF output of STR's I believe symbolic alleles are commonly used, e.g.: for a variant of 20 repeat units.
Is there a reason Straglr is outputing the full sequence as ALT all…
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Hi,
I split the 1000GP chrX VCF into nonPAR, PAR1, and PAR2 regions then tried creating .msav files with these but I encountered some issues. Below is the code I used.
```bash
#/usr/bin/env bas…
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I have an issue with successfully running the genebe commandline tool.
**input command:**
`genebe annotate --input 24072-01-01_split.vcf --output 24072-01-01_split_genebe.vcf --progress`
**erro…