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Another form of sequence analysis is doing immune repertoire sequencing of the [VDJ recombination](https://en.wikipedia.org/wiki/V(D)J_recombination) locus in B and T cells.
For captured/enriched …
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Based on the common use of terms like:
- cell type
- cell state
- cell stage
- subtypes
- terminally differentiated cell
- multipotent, totipotent cell,
- undifferentiated cell
- transdif…
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Hello,
I have a fasta file with below format, and like to have VDJ assignment based the reference (IGMT or IGBLAST) for each of the sequence. After running the abstar on my fasta file, no output gene…
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I am testing SCEVAN for stratifying malignant cells in CD45 sorted dataset, i.e., up to a certain limit, I am confident about the cells' status (malignant versus normals). On that note, I noticed that…
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Hi,
I tried using your tool which runs perfectly, but none of my SVs are lifted.
I'm trying to lift SVs called with NanomonSV tool from nanopore data with T2T reference genome to hg38 to annotate …
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## 🐛 Bug
I get this error when I use repLoad(/path/to/mixcrclonesoutputfile.txt).
Error in strsplit(df[[.dalignments]], "|", TRUE, FALSE, TRUE) :
non-character argument
I recheck the data…
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Hi your webserver is down. Can you please fix this?
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Right now I cut the CDR3 exactly in half. But here's a plot of the length of the untrimmed genes:
![image](https://user-images.githubusercontent.com/112708/52156652-5e187600-263e-11e9-9b5e-aabb1317…
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Hi Quentin
I haven't managed to find any information about how IGoR handles allelic variants presented in models. In default models some IGHV, TRAV and TRBV genes have several alleles (up to 7) and…
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Hello,
I have a question about how the VDJs are assigned to the contigs.
I have a trust4_cdr3.out, and I can see for example for malignant cells in my data, there are multiple VDJs. How is this po…