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This is regarding the quote obtained for WGBS sequencing (#1732) .
For this sequencing run we plan to include DNA from a few different Pacific cod tissue types (blood, fin, jawbone). The blood and…
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@kubu4 can you ask Macrogen for the cost is per sample for WGBS data for the Pacific sleeper shark, target coverage of 20x for a large genome (could be as large as 12Gb). This could theoretically be …
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Hi, I have some WGBS data and would like to check the copy number variant in these data. However, I am not sure whether CNVkit is suitable for WGBS data since the methylated C is converted to T in WGB…
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Hi, Gabriel Lodom,
Is it possible to use coMethDMR to analyze genome-wide methylation data?
arrayType='wgbs'?
Best regards
Yeduo
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Thanks for developing this tool for ceDNA analysis. I have some bam files from generated from WGBS data and am wondering if AmpliconSuite is able to use these bam files as input for ceDNA detecion? If…
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Hello,
sorry to bother again. I've been trying to look for the WGBS DNA methylation data, but it does not seem to be available in GEO. Is it available somewhere?
Thank you!
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Hi,
I am coming from [here](https://github.com/huishenlab/sv_calling_docker).
Basically, Delly is one of the tools suggested to identify SVs from WGBS data.
I am wondering to what extent this…
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https://github.com/stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINT and https://github.com/Bioconductor/Contributions/issues/1207
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Hello everyone!
My Name is Azlan and i am currently analyzing our ONT Data. I wanted to use uxm and wgbs_tools to further investigate the methylation status in different samples and just wanted to…
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Hello,
I am trying to use BS Seeker 2 to make an index of the Bovine Reference Genome for later alignment with WGBS data.
I ran the code:
python bs_seeker2-build.py -f ~/reference/file/locatio…