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Hallo all,
This happens :
```bash
Creating environment from /home/tgeorgom/mambaforge/envs/snakePipes/lib/python3.12/site-packages/snakePipes/shared/rules/envs/wgbs.yaml in /home/tgeorgom/mambaforg…
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Hi, Gabriel Lodom,
Is it possible to use coMethDMR to analyze genome-wide methylation data?
arrayType='wgbs'?
Best regards
Yeduo
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Hi, I have some WGBS data and would like to check the copy number variant in these data. However, I am not sure whether CNVkit is suitable for WGBS data since the methylated C is converted to T in WGB…
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I found that the repeat regions were not well aligned using the default parameters when I aligned the WGBS data to the hg38 genome. I am wondering if there are any recommended parameter settings for a…
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Input requirements:
1. Count matrix of mRNA expression with samples in rows and genes in columns
2. Count matrix of smallRNA expression with samples in rows and genes in columns
3. Count matrix…
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https://github.com/stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINT and https://github.com/Bioconductor/Contributions/issues/1207
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Hello,
sorry to bother again. I've been trying to look for the WGBS DNA methylation data, but it does not seem to be available in GEO. Is it available somewhere?
Thank you!
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Hi,
I am coming from [here](https://github.com/huishenlab/sv_calling_docker).
Basically, Delly is one of the tools suggested to identify SVs from WGBS data.
I am wondering to what extent this…
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Hello,
I am trying to use BS Seeker 2 to make an index of the Bovine Reference Genome for later alignment with WGBS data.
I ran the code:
python bs_seeker2-build.py -f ~/reference/file/locatio…
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Bug in R-Script coveragePlot.R, finishes with error:
```
Error in axis(1, at = pretty(c(0, nrow(sampleOneCon[[i]]))), labels = paste(pretty(c(0, :
'at' and 'labels' lengths differ, 8 != 5
Execu…