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AllenInstitute
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AllenSDK
code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Request (Allen Brain Observatory Data): Access to ophys metadata as csv files
#2694
ehennestad
opened
1 year ago
0
Error reading NWB file while session cache is instantiated in workspace
#2693
slcalgin
opened
1 year ago
0
Ticket/PSB-126: Include the "Natrual Movie 1" shown to the mice as part of the data release.
#2692
morriscb
closed
11 months ago
1
Ticket/PSB-126: Include the "Natrual Movie 1" shown to the mice as part of the data release.
#2691
morriscb
closed
1 year ago
0
brain observatory pupil size data
#2690
mohamadamin-fjz
closed
1 year ago
1
Ticket/PSB-130:
#2689
morriscb
closed
1 year ago
1
Jupyter notebook instance to access data on AWS gets stuck and fails during creation
#2688
atleer
closed
8 months ago
2
pip install allensdk fails in new Conda environment
#2687
Jballbe
closed
11 months ago
15
Ticket/PSB-125: Fix bugs in stimulus_presentations table discovered during NWB validation
#2686
morriscb
closed
1 year ago
0
Flawed primary injection structure logic
#2685
lydiang
closed
11 months ago
1
JSONDecodeError when running oapi.get_structures_with_sets([1])
#2684
pderdeyn
opened
1 year ago
1
Ophys NWB Conversion fails if a dff file is missing
#2683
Ahad-Allen
opened
1 year ago
9
Bugfix/im read
#2682
Ahad-Allen
closed
1 year ago
1
add_lfp_to_nwb Function seems to add the LFP probe data twice
#2681
Ahad-Allen
opened
1 year ago
0
Optogenetic information in NWB files could be using a more specific data type
#2680
Ahad-Allen
opened
1 year ago
0
ticket/PSB-42: Address issues arrising from VBO NWB validation.
#2679
morriscb
closed
1 year ago
1
Fix gaussian_function_2d flipped axes
#2678
mikejhuang
closed
1 year ago
0
datasets diffrences
#2677
alih100011
opened
1 year ago
1
extract event trace
#2676
alih100011
opened
1 year ago
0
ticket/PSB-90: Modify VBO metadata writer to test upload of NWBs to S3 cache
#2675
morriscb
closed
1 year ago
2
PSB-17 Read session type, date of acquisition from db
#2674
aamster
closed
1 year ago
0
ticket/PSB-86: Small behavior NWB file creation fixup
#2673
morriscb
closed
1 year ago
1
Using imread for Ophys Projections automatically casts them to floats
#2672
Ahad-Allen
opened
1 year ago
0
Add seeds to notebooks
#2671
mikejhuang
closed
1 year ago
1
Changes to support python 3.10
#2670
aamster
closed
1 year ago
1
Ticket/psb 49/fix fit 2d gaussian
#2669
mikejhuang
closed
1 year ago
2
ticket/PSB-91: Add trials_id calculation to BehaviorSession creation.
#2668
morriscb
closed
1 year ago
6
ticket/PSB-70: Flipped running polarity for VBN behavior only sessions.
#2667
morriscb
closed
1 year ago
1
Color annotations for Allen Mouse Brain Atlas
#2666
mariakesa
closed
1 year ago
2
Ticket/PSB-44: Explicit naming of VBO stim blocks
#2665
morriscb
closed
1 year ago
1
Feature non behavior ophys nwb
#2664
Ahad-Allen
opened
1 year ago
2
Adding support for stimuli in omFISH project (STAGE_0 and STAGE_1 session types)
#2663
omidzobeiri
opened
1 year ago
1
ticket/PSB-43: Parse key stimulus & imaging modality features and record them individually
#2662
morriscb
closed
1 year ago
0
Flipped running polarity for VBN behavior only sessions
#2661
corbennett
opened
1 year ago
13
update VBO read the docs page
#2660
matchings
closed
1 year ago
0
Various fixes to dff calculation
#2659
mikejhuang
closed
1 year ago
1
Ticket/PSB-13: Pika validation of VBO data release
#2658
morriscb
closed
1 year ago
3
Slow loading of Visual Behaviour Npixels data
#2657
seankmartin
closed
1 year ago
2
Reproduce VBO functional clustering results
#2656
matchings
closed
1 year ago
1
X,Y coordinate flip in receptive_field_mapping.fit_2d_gaussian
#2655
michaheilbron
closed
1 year ago
0
Error-when using session.stimulus_presentations #2637 not solved
#2654
mariakesa
closed
1 year ago
1
Can't download experiment files from Neuropixels Brain Observatory
#2653
mariakesa
closed
1 year ago
2
rc/2.15.1: HOTFIX
#2652
morriscb
closed
1 year ago
2
Violation of SWC spec in at least three files
#2651
patrick-nicodemus
closed
1 year ago
1
Rc/2.15.0
#2650
aamster
closed
1 year ago
3
Update Data changes for VBN.
#2649
morriscb
closed
1 year ago
2
Add targeted_imaging_depth column to get_ophys_experiment_table
#2648
mikejhuang
closed
1 year ago
4
rc/2.14.2: Various VBN bug fixes.
#2647
morriscb
closed
1 year ago
0
Backward compatibility between allensdk 2.13.5 and 2.14.1 broken for VBN manifest 0.3.0
#2646
corbennett
opened
1 year ago
0
Run isort+black on changes from ticket-2541.
#2645
morriscb
closed
1 year ago
0
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