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AllenInstitute
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AllenSDK
code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Add number of valid ROIs to ophys_experiments_table (cache/manifest table)
#2544
DowntonCrabby
closed
1 year ago
7
add more information to ophys_cells_table cache/manifest table
#2543
DowntonCrabby
closed
1 year ago
5
ImportError: cannot import name 'popargs_to_dict'
#2542
ZhenyaoYe
closed
1 year ago
9
Add project_code to a couple new locations
#2541
DowntonCrabby
opened
1 year ago
19
incorrect key name in ophys_experiment.metadata
#2540
DowntonCrabby
opened
1 year ago
1
Ticket/2538/pandas/1p5p0
#2539
danielsf
closed
1 year ago
1
Update unittests to pass with pandas 1.5.0
#2538
danielsf
closed
1 year ago
1
Bugfix/nightly/test/220915
#2537
danielsf
closed
1 year ago
2
read date of acquisition from lims instead of from pkl file
#2536
aamster
opened
1 year ago
0
read session type from lims database instead of from pkl file
#2535
aamster
opened
1 year ago
0
Read values from LIMS db, rather than pkl file
#2534
aamster
opened
1 year ago
0
Don't use published_at dates when querying for release sessions
#2533
aamster
opened
1 year ago
0
Loading experiments table requires downloading all pkl files
#2532
mattjdavis
opened
1 year ago
32
bugfix: use mask instead of image to set nan pixels
#2531
aamster
closed
1 year ago
0
calculate_reward_rate fails for VBN data
#2530
matchings
opened
1 year ago
1
static_gratings stimulus
#2529
alih100011
opened
1 year ago
3
Update vbn quality metrics tutorial
#2528
corbennett
closed
1 year ago
2
explicit naming of VBN stimulus blocks
#2527
matchings
opened
1 year ago
15
Improvements to stimulus presentations table
#2526
aamster
closed
1 year ago
0
Stimulus timestamps sometimes truncated 1 frame too early
#2525
aamster
opened
1 year ago
0
Traces returned by BehaviorOphysExperiment.corrected_fluorescence_traces are not neuropil corrected
#2524
aamster
closed
1 year ago
3
Update vbn notebooks
#2523
corbennett
closed
1 year ago
2
biophysical model
#2522
bahpah
opened
1 year ago
2
event trace in boc
#2521
alih100011
opened
1 year ago
6
encoding in mouse visual cortex
#2520
alih100011
closed
1 year ago
1
extract event traces of a cell
#2519
alih100011
closed
1 year ago
1
event trace in boc
#2518
alih100011
closed
1 year ago
0
Cannot instantiate BehaviorSession using get_behavior_session in VisualBehaviorNeuropixelsProjectCache
#2517
aamster
opened
1 year ago
0
unwarped images in VBN session object stimulus_templates have missing (NaN) pixels
#2516
corbennett
closed
1 year ago
1
add image novelty column to VBN session stimulus_presentations table
#2515
corbennett
closed
1 year ago
4
Visual Behavior - Neuropixels July 2022 LFP data and probe missmatch
#2514
m-abdollahi
closed
1 year ago
3
KeyError: "'ndx-aibs-ecephys' not a namespace" when loading NWB files
#2513
dervinism
opened
1 year ago
3
Rc/2.13.6
#2512
aamster
closed
1 year ago
1
VBN notebook updates
#2511
aamster
closed
1 year ago
1
Matplotlib fails to import in fresh allensdk install in python 3.7
#2510
egmcbride
closed
1 year ago
2
Fixes issue with accessing stimulus presentations table of released v…
#2509
aamster
closed
1 year ago
0
Error while extracting stimulus presentations | Visual Coding – Neuropixels 2019
#2508
m-abdollahi
closed
1 year ago
3
Mouse atlas in surface space
#2507
Davi1990
opened
1 year ago
0
rename stop_time -> end_time in stimulus presentations table to be co…
#2506
aamster
closed
2 years ago
0
ticket-2046: Filter pupil_width and other eye tracking columns similarly to pupil_area
#2505
morriscb
closed
2 years ago
2
add imaging plane group to project tables
#2504
aamster
closed
2 years ago
0
pip install allensdk on M1 Mac fails
#2503
FBen3
closed
1 year ago
9
Make sure datatypes returned by from_s3 are same as those returned vi…
#2502
aamster
closed
2 years ago
0
rename experiment_container_id -> ophys_container_id
#2501
aamster
closed
2 years ago
0
drop columns 'image_set' and 'index' from stimulus presentations table
#2500
aamster
closed
2 years ago
0
rename stimulus_change -> is_change in trials table
#2499
aamster
closed
2 years ago
0
rename autorewarded to auto_rewarded in rewards table
#2498
aamster
closed
2 years ago
0
Ophys cells table now supports passed_only filter
#2497
aamster
closed
2 years ago
1
AWS jupyter notebook
#2496
bainro
closed
2 years ago
2
Adds support for VBN trials table having different name for 'change_time'
#2495
aamster
closed
2 years ago
0
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